A testis‐specific gene within a widely expressed gene: Contrasting evolutionary patterns of two differentially expressed mammalian proteins encoded by a single gene,CAMK4

Understanding the patterns of genetic variations within fertility‐related genes and the evolutionary forces that shape such variations is crucial in predicting the fitness landscapes of subsequent generations. This study reports distinct evolutionary features of two differentially expressed mammalian proteins [CaMKIV (Ca²⁺/calmodulin‐dependent protein kinase IV) and CaS (calspermin)] that are encoded by a single gene, CAMK4. The multifunctional CaMKIV, which is expressed in multiple tissues including testis and ovary, is evolving at a relatively low rate (0.46–0.64 × 10^?9 nucleotide substitutions/site/year), whereas the testis‐specific CaS gene, which is predominantly expressed in post‐meiotic cells, evolves at least three to four times faster (1.48–1.98 × 10^?9 substitutions/site/year). Concomitantly, maximum‐likelihood‐based selection analyses revealed that the ubiquitously expressed CaMKIV is constrained by intense purifying selection and, therefore, remained functionally highly conserved throughout the mammalian evolution, whereas the testis‐specific CaS gene is under strong positive selection. The substitution rates of different mammalian lineages within both genes are positively correlated with GC content, indicating the possible influence of GC‐biased gene conversion on the estimated substitution rates. The observation of such unusually high GC content of the CaS gene (≈74%), particularly in the lineage that comprises the bovine species, suggests the possible role of GC‐biased gene conversion in the evolution of CaS that mimics positive selection.     

Health risk assessment via consumption of Pb and Cd contaminated vegetables collected from fresh markets in the lower north of Thailand

This study aimed to investigate the Pb and Cd contamination and health risk assessment for population via consumption of vegetables sold in fresh markets around the lower north of Thailand. The concentrations of Pb and Cd in various vegetables such as root/tuber, stem, inflorescence, fruit, and leaf vegetables were analyzed using an atomic absorption spec-trophotometer. Human health risks of these metals in vegetables were assessed based on target hazard quotient (THQ). The results indicated that more than 80% of the Pb and Cd in almost all vegetable samples exceeded the maximum allowable concentration by National Food Institute criteria with an average range of 0.96–3.39 and 0.48–1.40 mg/kg, respectively. The estimated daily intakes (EDI) of Pb and Cd via dietary consumption of vegetables were between 0.001–0.010 and 0.002–0.008 mg/kg/d, respectively. All EDIs of Pb contaminated vegetables were higher than the reference dose recommended by the USEPA except for leaf edible vegetables, while all EDIs of Cd contaminated vegetables were higher than the reference dose recommended by the USEPA. THQ indicated that the consumption of Pb contaminated root/tuber, stem, inflorescence, and fruit edible vegetables and Cd contaminated leaf vegetable for the local population in the lower north of Thailand could be a severe health risk problem.     

Plant and soil intake by organic broilers reared in tree- or grass-covered plots as determined by means of n-alkanes and of acid-insoluble ash

Free-range birds such as organic broilers may ingest soil and plants during exploration. The estimation of such intakes is of great interest to quantify possible nutritional supplies and also to evaluate the risk of exposure to parasites or to environmental contaminants. Marker-based techniques are now available and would allow to quantify plant and, especially, soil intake in free-range birds, and this quantification was the aim of this study. Methodologically, the proportion of plants in diet intake was determined first using a method based on n-alkanes. Subsequently, the fraction of soil in the total intake was estimated with a second marker, acid-insoluble ash. This approach was carried out to estimate ingested amounts of plants and soil for five successive flocks of organic broilers, exploring grass-covered yards or those under trees, at two time points for each yard: 51 and 64 days of age. Each factor combination (yard type×period=flock number×age) was repeated on two different yards of 750 broilers each.The birds’ plant intake varied widely, especially on grass-covered yards. The proportion of plant intake was significantly higher on grass-covered plots than under trees and was also affected, but to a lesser extent, by age or flock number. The ingestion of plants would generally not exceed 11 g of DM daily, except two extreme outliers of nearly 30 g. The daily plant intake under trees tended to be lower and never exceeded 7 g of DM. The amount of ingested plants increased significantly for spring flocks. It increased slightly but significantly with age. The proportion of ingested soil was significantly higher under trees than on grass-covered yards. Dry soil intake was generally low with not more than 3 g per day. Only in adverse conditions – that is, older birds exploring yards under trees in winter – soil intake reached the extreme value of nearly 5 g. Broilers on yards under trees ingested significantly more soil than on grass-covered yards with least square means of, respectively, 2.1 and 1.1 g dry soil per day. These quantifications would allow us to evaluate the impact of plant and soil intake in the management of free-range broilers, especially for the management in organic farming systems. Nevertheless, under the two rearing conditions tested in the current study, the quite low proportions of soil intakes would represent a low risk for the safety of the produced food, unless the birds explore yards on heavily contaminated soil.     

Intake assessment of L-ergothioneine in some European countries and in the United States

L-ergothioneine is an amino acid synthetized by fungi and mycobacteria that cannot be synthesized by other species. It has been detected in plants, animals, and the human body. In the last few years, it has been recognized as a good antioxidant and, recently, it has also been related to other properties besides antioxidant properties. Even though few studies on the toxicity of L-ergothioneine have been carried out, evidence suggests that L-ergothioneine is not harmful to health. Considering that L-ergothioneine has increasingly been linked to positive effects on human health, coupled with the fact that it seems to be safe for human consumption, this molecule may be suitable for use as an ingredient in foods. On the other hand, despite the positive effects reported for this molecule, no estimate of L-ergothioneine intake has been carried out until now. Thus, the aim of this work is to estimate the intake of L-ergothioneine through food consumption of several European countries and the United States. Values were estimated by using the deterministic and probabilistic approach. Results show that the populations with the highest intake of L-ergothioneine correspond to Italian population, both for children and adults.     

Comparisons of Some Chi-Squared Goodness-of-Fit Test Statistics in Sparse One-Way Multinomials

The behavior of Pearson's X² test, the likelihood ratio test Y² and the two of its derivatives, G² and G_k², the Freeman-Tukey test (FT) and the Cressie and Read test Statistic I(2/3) are examined in this study. Estimated attained α levels based on 1000 simulated samples when the approximating distribution is χ_k-1², are computed for these tests for the various values of k, n and seven null hypotheses. Results from estimated power computations indicate that none of the test statistics has a clear advantage over any others, and that the choice of which test to use must therefore rest mainly on the performances with regards to the attained α levels when the χ² approximation is invoked. In this respect, the log-normal approximation proposed by Lawal and Upton (1980) is strongly recommended. This is closely followed by the I(2/3).     

Predictors of Weight Loss in Adults with Topiramate‐Treated Epilepsy

Objective: We examined predictors of weight loss with topiramate, an anticonvulsant associated with weight loss in adults. Research Methods and Procedures: In this uncontrolled, prospective clinical trial, topiramate was added to existing anticonvulsants in adults (40 to 110 kg) with partial‐onset seizures. Primary measurements were change from baseline weight after 3 months and 1 year in patients completing 1 year of topiramate treatment (N = 38). Physiological and metabolic measures were analyzed for correlation with weight loss during topiramate treatment. Results: In patients who completed 1 year of topiramate treatment, baseline weight was reduced in 82% at 3 months and in 86% at 1 year. Mean body weight was reduced 3.0 kg (3.9% of baseline) at 3 months and 5.9 kg (7.3%) at 1 year. In obese patients [body mass index (BMI) ≥ 30 kg/m²], mean weight loss was 4.2 kg (4.3%) at 3 months and 10.9 kg (11.0%) at 1 year. Weight loss was primarily caused by reduction in body fat mass. For all patients, weight loss at 3 months correlated most strongly with reduced caloric intake (p = 0.02). At 1 year, caloric intake had returned to baseline levels; weight loss correlated most strongly with higher baseline BMI (p = 0.0007). Discussion: Our results suggest that weight loss occurs in most adults treated with topiramate and is sustained for at least 1 year. Reduced caloric intake may account, in part, for weight loss during early treatment. The pattern of weight loss differs according to baseline BMI, with obese patients experiencing greater weight loss during continued therapy.     

Lasioseius Fimetorum: a soil-dwelling predator of glasshouse pests?

Female lifespan and reproduction, in terms of numberof larvae produced, of the soil-dwelling predatorymite Lasioseius fimetorum Karg (Acari:Podocinidae) fed on mould mites (Tyrophagusputrescentiae [Schrank] [Acarina: Acaridae]) wereinvestigated by laboratory experiments at 20 °C,as were the mite's consumption rates of various prey.After a preoviposition period of 10.7 days, L.fimetorum produced progeny at a daily rate of 0.7.The oviposition period lasted 23.6 days and a total of19.4 progeny were produced per female. Females livedfor 38.6 days. Eggs of the Collembola Isotomurusspp. (Collembola: Isotomidae) were consumed in thelargest amount by L. fimetorum followed by mouldmite nymphs, larvae and pupae of thrips (Frankliniella occidentalis [Pergande] [Thysanoptera:Thripidae]), eggs of the Collembola Micrisotomaspp. (Collembola: Isotomidae), Isotomurus spp.nymphs and sciarid larvae (Bradysia pauperaTuomikoski and B. tritici (Coquillet) [Diptera:Sciaridae]). Immature drain flies (Psychoda spp.[Diptera: Psychodidae]) were not consumed by L.fimetorum. The suitability of L. fimetorum forbiological control of glasshouse pests withsoil-dwelling stages is discussed in comparison withanother predatory mite Hypoaspis miles Berlese(Acarina: Hypoaspididae).     

Curiously Modern DNA for a ``250 Million-Year-Old' Bacterium

Studies of ancient DNA have attracted considerable attention in scientific journals and the popular press. Several of the more extreme claims for ancient DNA have been questioned on biochemical grounds (i.e., DNA surviving longer than expected) and evolutionary grounds (i.e., nucleotide substitution patterns not matching theoretical expectations for ancient DNA). A recent letter to Nature from Vreeland et al. (2000), however, tops all others with respect to age and condition of the specimen. These researchers extracted and cultured a bacterium from an inclusion body from what they claim is a 250 million-year (Myr)-old salt crystal. If substantiated, this observation could fundamentally alter views about bacterial physiology, ecology and evolution. Here we report on molecular evolutionary analyses of the 16S rDNA from this specimen. We find that 2-9-3 differs from a modern halophile, Salibacillus marismortui, by just 3 unambiguous bp in 16S rDNA, versus the ∼59 bp that would be expected if these bacteria evolved at the same rate as other bacteria. We show, using a Poisson distribution, that unless it can be shown that S. marismortui evolves 5 to 10 times more slowly than other bacteria for which 16S rDNA substitution rates have been established, Vreeland et al.'s claim would be rejected at the 0.05 level. Also, a molecular clock test and a relative rates test fail to substantiate Vreeland et al.'s claim that strain 2-9-3 is a 250-Myr-old bacterium. The report of Vreeland et al. thus falls into a long series of suspect ancient DNA studies. Received: 12 April 2001 / Accepted: 9 June 2001     

Analysis of distributions of mutants in clones of plant-cell aggregates

Summary The organization of plant cells (or any other genetic elements, such as organelles) into aggregates modifies the expected distribution of mutants in clones. The reason for the modification, and its effect on the use of the Luria-Delbrück fluctuation test, are discussed. The Luria-Delbriick test was used to show that the trait for chlorate resistance in cultured rose-cell aggregates appeared spontaneously and in the absence of chlorate ion.     

Patch area, population density and the scaling of migration rates: the resource concentration hypothesis revisited

Empirical research has for a long time observed that animal densities may both increase and decrease with patch size, and these variable responses have been difficult to explain using the current theoretical framework. The most influential hypothesis, the resource concentration hypothesis, predicts only positive density–area relations, as a consequence of different emigration and immigration rates in small and large patches, and empirical deviations have inspired a flurry of alternative explanations. In this paper, we use realistic rules for the relationship between patch size and migration rates and show a wider predictive range for density–area relations than previously believed. Comparisons with published data suggest that observed density–area relations may easily fit in a framework based on a minimum set of behavioural and population processes. This does not imply that other mechanisms are unimportant, but merely that their quantitative importance can only be evaluated relative to patch geometry and local growth.